SP 10 running slow
Is is running about 2 seconds slow per min. I know the gears for adjusting the time are NOT slipping because I glued them together for test purposes. I feel no binding when I tun the gear assembly by hand. I adjusted the pot on the driver to turn up the power to see if the motor was skipping. It is not. I have the jumper on the correct setting.
What am I missing here? Is there a way to "fine tune" the motor speed to correct this? Please help. Thank you

There are only three places for the gears to slip, and you have already ruled out most of them. The motor is not skipping, and the friction clutch is not slipping. The friction clutch is after the second hand, so the second hand would still be accurate if the friction clutch was slipping. The only other place that can physically slip is the stepper motor gear slipping on the motor shaft. Make sure to rule this out.
The next most likely causes are with the electronics. A 2 second per minute error probably has the correct jumper settings, so the first thing to check is the RTC. There will be a blinking LED on the Arduino Nano if the RTC is tracking properly.
The algorithm works in one second increments. It moves the motors slightly fast or slightly slow for one second, then checks if the RTC has sent a 1Hz pulse. If it detects the pulse, then the motor switches to fast speed mode. As soon as the RTC falls behind, then the motors switch to slow speed mode, giving the RTC more time to catch up. The LED blinks every time the mode changes. The difference between fast and slow modes is not noticeable and over a long period of time the motor will track the RTC exactly.
There is no way to fine tune the algorithm. It either tracks the RTC or it doesn't. The most likely cause of not tracking is a dead, missing, or mis-wired RTC chip if you built your own board.
Is there a blinking LED on the Arduino Nano?
The serial debug monitor would provide extra information but is a lot of steps if you purchased a pre-programmed board.